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Of the 22?840 probe sets on the Affymetrix GeneChip, 70% (15?967) showed significant expression in embryo tissue based on the ��Present�� call by the Affymetrix��mas 5.0 algorithm. Of these genes, 81% had one or more eQTL that could be detected by composite interval mapping at a genome wide False Discovery Rate of 5%, resulting in a total of 23?738 eQTL. Among the 36% (5764) of genes with just one
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